PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539897.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 93aa    MW: 10846.4 Da    PI: 9.5084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-101053344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WTt   +++ +a + + ++   +W+ +a+ +g g++++++k+++
   XP_010539897.1 10 TWTTKQNKKFEKALAVYDKDtpdRWENVAKAVG-GKSPEEVKHHY 53
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.516357IPR017877Myb-like domain
SuperFamilySSF466899.79E-13359IPR009057Homeodomain-like
SMARTSM007171.1E-7759IPR001005SANT/Myb domain
PfamPF002498.5E-81053IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-51060IPR009057Homeodomain-like
CDDcd001678.93E-71053No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASSCMSSST WTTKQNKKFE KALAVYDKDT PDRWENVAKA VGGKSPEEVK HHYDILVEDL  60
MNIERDRVPL PKYKTLSRRI DDFDSRLMKN LKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-33193192RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539897.12e-64PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1731e-44RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A078CDZ95e-45A0A078CDZ9_BRANA; BnaC06g36010D protein
STRINGAT1G19510.11e-40(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-46RAD-like 6